What to Do When Your Payment Processor Increases Your Fees

What to Do When Your Payment Processor Increases Your Fees
By Mary Brock May 12, 2025

The term payment processor fee increase indicates when your payment handling firm (such as Stripe, PayPal, Square or a bank-operated merchant service) raises the expense you pay for managing client payments through credit/debit cards and online transactions.

What Do Payment Processors Do?

Payment processors form an essential part of electronic payment processing environments because they enable businesses to process diverse payment methods from their customers. Payment processors deliver three key services which I will explain.

  • Transaction facilitation

The payment processor receives transaction details from customers and securely forwards them to appropriate parties which consist of issuing banks and acquiring banks through the card network.

  • Authorisation and authentication

The payment processor needs issuing bank authorisation to verify the customer’s available funds or credit balance. Payment verification processes identify customers while checking payment methods for validity purposes which helps prevent both fraud and unauthorized transactions.

  • Encryption and security

The transmission of transaction data from customers to businesses to banks gets protected through payment processors who deploy encryption together with tokenization methods. An environment for handling cardholder information must meet all requirements of the Payment Card Industry Data Security Standard (PCI DSS) to maintain security compliance.

  • Settlement and funding

Payment processors ensure that authorized transactions receive funded transfers that start at issuing banks before reaching acquiring banks. From the merchant account transaction amount emerges an adjusted total which subtracts all fees applicable to the transaction process.

  • Data for reporting and analytics

The payment processing system creates payment transaction data which merchants can use to make transaction reports and business analytics to monitor sales performance and business management.

  • Fraud detection and chargeback management

Presidential payment processors implement sophisticated analytical tools alongside monitoring systems to track fraudulent deals which reduces business exposure to fraudulent activity. The provider helps businesses manage disputes and handle chargeback processes.

  • Payment processors enable support for various currencies together with different payment methods

Businesses can use payment processors to expand globally through features which enable them to process multiple currencies and popular local payment methods. Businesses can operate globally using Stripe’s support of more than 135 currency options to gain payments in local currencies while expanding internationally.

The payment processing charges depend on various influencing elements

The exact payment processing costs that processors or payment gateways charge depend on multiple established factors. The exact payment processing fees affiliate with the transaction depends on several factors including the destination nation for the purchase and its type together with the payment method and the card network. Your ability to control payment processing fees exists for certain factors though many other influential factors remain constant.

The four-digit Merchant Category Code (MCC) operates as a unique identifier system for every card scheme to define retail categories. Interchange fees depend on risk assessments because risky business types pay higher fees than charities and utility companies who are considered lower risk.

The location where a transaction occurs plays an important role since it leads to different fee costs. Transaction fees fluctuate depending on the location between separate geographical areas. Lower card fees exist within EU territory because of governments implementing specific directives.

Whether payment transactions occur within one region or span across borders makes a difference in determining fees. Banks charge higher fees for international and cross-border deals because currency conversions take place between regions which have different pricing standards.

‍Every transaction and customer type on a card network system leads to varying fees from each network. The interchange rates are influenced by Visa, MasterCard, American Express, and other payment networks because they operate unique fee systems. Membership fees for Visa transactions range between 1.15% and 2.40% in combination with five to ten cents per transaction whereas Mastercard charges within this similar rate bracket of 1.15% to 2.50% linked with similar transaction fees from five to ten cents. The payment fees at American Express span from 1.43% to 3.30% with an additional ten-cent fee.

‍Risk evaluation depends on whether the card exists during the transaction as an in-store purchase or an online transaction. CP transactions face lower risks than CNP transactions because of which they receive lower interchange fees.

‍The payment immediacy of debit transactions reduces risk making interchange fees lower than credit transacting where payment occurs after several days thus creating risk of default. The selected card category among platinum, gold or titanium makes a difference in potential fees. The cost of fees rises in segments where cards come with premium status.

‍The processing fees may stem from transaction volume instead of payment method selection. The processing fees for large-scale global merchants become more economically beneficial since they are charged based on historical and estimated monthly transaction quantities instead of individual transaction amounts. The rule is not applicable to scheme fees and interchange fees but only extends to this category.

Understanding Payment Processing Fees

Your company might need to pay various processing costs that depend on what payment processing method you use as well as the agreements with your partners and service providers. Your payment processor may establish various fees that change according to the type of transaction. Lowering processing costs depends heavily on your complete comprehension of fee calculations together with your knowledge about what causes them along with your familiarity with avoidance strategies.

Your business encounters various payment processing fees associated with handling online payments through the following main kinds of fees.

You will encounter a gateway fee whenever your payments require gateway technology to transmit payment information during the processing stage. The gateway service fees compensate the providers for running transaction processing services.

Electronic payment processing expenses, known as acquirer fees exist for offsetting original transaction expenses.

Your payment processing network incurs fees whenever it requires communication with issuing banks for account verification before sending transactions. You must pay costs for transmitting payment data since each credit card network such as Amex, MasterCard and Visa requires payment to handle processing your credit card transactions.

For credit card sales the bank that supports your payment processor requires contact with the issuing bank that regulates the credit card. Bank-issuing entities impose interchange fees during debit and credit card transaction processing.

Can I Negotiate to Lower Fees with My Current Payment Processor?

You should explore multiple strategies to reduce expenses in payment processing

Your payment processing fee rates remain constant except through direct negotiations with your payment process provider yet implementing certain strategies enables you to utilize the best payment processing conditions. Your payment setup allows you to make active adjustments which enable you to access the most favourable fee rates during each transaction.

  1. The business conducts operations through multiple payment service providers (PSPs)

Large enterprise merchants need to work with multiple payment service providers because it provides advantages through various reasons.

  • You should select ideal payment paths to secure better prices

Your payments will benefit from your access to multiple processors because these processors allow you to choose ideal pricing based on location along with payment method requirements and transaction style.

U.S. merchants pay Mastercard transaction costs amounting to $0.13 and 2% interchange fees when using Adyen but must pay $0.30 together with 2.9% when using Stripe. The pricing and charges for transactions differ across nations and particular regions. Different processors achieve better acceptance rates when operating specific countries or with particular BINs.

Merchants achieve the lowest fees for their payments when they route transactions through identified favourable combinations. Businesses should work with regional acquirers for their payment processing since they commonly present the best terms available for domestic deals.

  • Negotiation leverage

The integration of various payment processors creates a situation where you can obtain better rates in negotiations against gateway, acquirer, refund and chargeback fees. Your fee bargaining power is minimal when you use one PSP alone. Studies of alternative payment service providers along with their associated costs will enable you to negotiate reduced fees during negotiation sessions with your current payment service providers.

  1. Organizations should implement regional Alternative Payment Methods (APMs)

An examination showed that payment methods generate different processing fees based on the bank, regardless of keeping their fees constant. Strong payment methods from specific marketplaces maintain the lowest payment rates because they come from numerous funding sources.  Within the U.S., domestic bank transfers and ACH payments often provide lower-cost alternatives to credit cards. Encouraging customers to use bank-based methods can help reduce transaction fees. when making transactions because they result in the lowest fees. Enterprise merchants gain benefits from bank transfers as a payment method because local markets present this method with a fixed fee pricing structure.

APMs eliminate the necessity to pay for fraud prevention fees and chargeback costs because merchants do not have responsibility regarding fraud. Your payment success rates benefit from implementing local alternative payment choices at the same time as these new methods can minimize fees for processors. Chiapetto states that merchants who provide multiple payment choices may raise their conversion levels between 22% to 30%.

  1. Local acquiring along with on-us payment processing should be made possible

The implementation of a local acquiring institution by merchants brings substantial cost savings because it provides on-us processing capabilities. When a payment transaction occurs through the bank which released the payment card it gets handled by its on-us processing system. In this case both the issuing bank and the acquiring bank share the same role.

The payment processing fees decrease through on-us processing because the institution that made the card works as both the transaction processor and the funds handler while bank transfers between banks remain unnecessary. Fee generation depends on the number of participating entities because smaller numbers result in smaller costs. On-us settlement processes payments more quickly because it removes the requirement to use alternative networks for processing.

Merchants executed through a payment orchestration platform can achieve on-us processing capabilities between various PSP services and acquiring institutions. U.S. businesses using payment orchestration platforms (e.g., Spreedly or Finix) can achieve “on-us” processing efficiencies when routing transactions through PSPs and acquiring banks that share issuing roles—reducing transaction costs and settlement delays.

  1. Improve your fraud prevention set-up

Payment fraud manifests itself in different channels with disputes and chargebacks representing some possible instances. Merchants need to minimize dispute-based fraud since they pay chargeback fees no matter what happens in the dispute process and these fees along with revenue losses reach substantial amounts: Chargeback fraud is expensive: A recent report found that more than a quarter of global merchants lose $5 million a year or more to transaction disputes.

Companies should integrate AI-based detection technology such as Forter, Ravelin and Sift to prevent fraud before granting payment authorization that helps avoid many associated costs. The service provided by Ethoca enables merchants to employ post-payment fraud defense strategies and completes pre-emptive refunds for confirmed fraud incidents to evade chargeback expenses

  1. Establish negotiations with your payment service providers

Excellent relationships with payment processors let you secure reduced fees since you either handle substantial transaction numbers or show an unusual business structure. Processors tend to show interest in fee agreements with business operators who maintained steady performance by avoiding fraud while keeping chargebacks and refunds to a minimum. Any new processor research should start with thorough negotiation before contract signing.

  1. Check that your defined merchant category code matches the correct one

Your business receives payment structure fees through its assigned merchant category code (MCC). It’s essential to confirm the accuracy of your business category because categories obtain better payment rates from card schemes.

  1. Delayed capture & void authorization

The procedure of deducting cardholder account funds through Acquirer, scheme, and interchange fees is called capture. The combination of delayed capture with void authorization enables merchants to reduce their refund fees when the refund ratio reaches high levels.

A delay in payment authorization enables merchants to approve funds without carrying out transactions from cardholder accounts. The drawn-out period normally spans from seven days up to twenty-eight days. It costs less to void an authorization instead of refunding money since scheme fees are incurred but at a reduced rate. To determine which days refunds, happen most commonly merchants should apply delayed capture before voiding authorizations on transactions leading to refunds.

  1. Regularly review your transaction history

Processing fees become easier to defend using data as an effective defense mechanism. Check your PSP transaction histories on a regular basis to learn about the conditions that affect your payments. Determine if you notice recurring patterns within transaction data that could affect the costs. Which payment method operates with fees that are higher than others? The payment analytics tool enables you to evaluate your processor performance to identify opportunities that will optimize your economic outcomes.

Conclusion

Your revenue suffers from rising payment processor fees as your business escalated its operations both domestically and internationally and its transactions multiplied. A clear comprehension of payment fee mechanisms alongside strategic provider negotiations and choice of different payment systems and local acquiring solutions and fraud prevention measures will restore management control over payment processes. Your business will achieve financial stability alongside increased competitive strength by combining management proactivity and payment service provider analysis with willingness to use multiple processing systems.